Installation ofthe StrathE2E model

De-compress the StrathE2E_Public.zip file, with setting to recreate the original folder structure.

You should have the following folder structure
StrathE2E_Public
     /Driving data
     /library
     /parameters
     /results
     /Target data

StrathE2E_Public should contain two files
     PROG_OCE_E2E_MODEL_RELEASE.R             Script to run the model
     ANNEALING_PROG_OCE_E2E_MODEL_RELEASE.R   Script to fit model parameters

There is a long section of introduction and explanation in the header of each script file

If you are a Windows user, towards the top of these scripts wou will find the lines
path        <- "C:/Users/ais04103/Documents/D/E2E_ecomodel/code/StrathE2E_Public/"
drivingpath <- paste(path,"Driving data/",sep="")
oudir       <- paste(path,"results/",sep="")

You need to set the path to the location where you extracted the folder StrathE2E_Public

As well as installing R, if you are running under Windows you need to install RTools
      https://cran.r-project.org/bin/windows/Rtools/
Regardless of operating system, you will also need the package deSolve
      https://cran.r-project.org/web/packages/deSolve/index.html

Then, just open an R command window and either:

Copy and paste the contents of one of the script files into the command window

or

Set the working directory to the path above, and type ... source("PROG_OCE_E2E_MODEL_RELEASE.R")

Should all run fine.